Abela IA*, Pasin C*, Schwarzmüller M*, Epp S, Sickmann ME, Schanz ME, Rusert P, Weber J, Schmutz S, Audigé A, Maliqi L, Hunziker A, Hesselman MC, Niklaus CR, Gottschalk J, Schindler E, Wepf A, Karrer U, Wolfensberger A, Rampini SK, Meyer Sauteur PM, Berger C, Huber M, Böni J, Braun DL, Marconato M, Manz MG, Frey BM, Günthard HF$, Kouyos RD$, Trkola A$. Multifactorial SARS-CoV-2 seroprofiling dissects interdepencies with human coronaviruses and predicts neutralization activity. MedrXiv 2021. ​

Pasin C, Moy RH, Reshef R, Yates AJ. Variable selection methods for predicting clinical outcomes following allogeneic hematopoietic cell transplantation. Scientific Reports 11, 3230, 2021. 

Pasin C, Balelli I, Van Effelterre T, Bockstal V, Solforosi L, Prague M, Douoguih M, Thiébaut R, for the EBOVAC1 consortium. Dynamics of the humoral immune response to a prime-boost Ebola vaccine: quantification and sources of variation. Journal of Virology, 2019 : JVI-00579. 

Pasin C, Dufour F, Villain L, Zhang H, Thiébaut R. Controlling IL-7 injections in HIV-infected patients. Bulletin of Mathematical Biology, 80(9): 23449-2377, 2018.

Pasin C, Halloran ME, Gilbert PB, Langevin E, Ochiai RL, Pitisuttithum P, Capeding MR, Carrasquilla G, Frago C, Cortés M, Chambonneau L, Moodie Z. Periods of high dengue transmission defined by rainfall do not impact efficacy of dengue vaccine in regions of endemic disease. PLOS ONE 13(12): e0207878, 2018.


Szabo PA, Dogra P, Gray JI, Wells SB, Connors TJ, Weisberg SP, Krupska I, Matsumoto R, Poon MML, Idzikowski E, Morris SE, Pasin C, Yates AJ, Ku A, Chait M, Davis-Porada J, Zhou J, Steinle M, Mackay S, Saqi A, Baldwin MR, Sims PA, Farber DL. Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19. Immunity, 2021.


Clairon Q, Pasin C, Balelli I, Thiébaut R, Prague M. Parameter estimation in nonlinear mixed effect models based on ordinary differential equations: an optimal control approach. ArXiv 2021. 

Balelli I, Pasin C, Prague M, Crauste F, Van Effelterre T, Bockstal V, Solforosi L, Thiébaut R. A model for establishment, maintenance and reactivation of the immune response after vaccination against Ebola virus. Journal of Theoretical Biology. 2020 Mar 21:110254. 

Prague M, Jeffrey MG, Balelli I, Pasin C, Li JZ, Barouch DH, Whitney JB, Hill AL. Viral rebound kinetics following single and combination immunotherapy for HIV/SIV. BioRxiv (2019): 700401.

Villain L, Commenges D, Pasin C, Prague M, Thiébaut R. Adaptive protocols based on predictions from a mechanistic model of the effect of IL7 on CD4 counts. Statistics in medicine. 2019 Jan 30;38(2):221-35. 


Gross L, Lhomme E, Pasin C, Richert L, Thiébaut R. Ebola vaccine development: Systematic review of pre-clinical and clinical studies, and meta-analysis of determinants of antibody response variability after vaccination. International Journal of Infectious Diseases, 74: 83-96, 2018

Lhomme E, Richert L, Moodie Z, Pasin C, Kalams SA, Morgan C, Self S, De Rosa SC, Thiébaut R. Early CD4+ T cell responses are associated with subsequent CD8+ T cell responses to an rAd5-based prophylactic prime-boost HIV vaccine strategy. PLOS ONE. 2016 Apr 28;11(4):e0152952.

Steinwart I, Pasin C, Williamson R, Zhang S. Elicitation and identification of properties. In Conference on Learning Theory 2014 May 29 (pp. 482-526).