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Chammartin F, Kusejko K, Pasin C, Trkola A, Briel M, Amico P, Stoeckle MP, Eichenberger AL, Hasse B, Braun DL, Schuurmans MM, Müller T, Tamm M, Mueller NJ, Rauch A, Koller MT, Günthard HF, Bucher HC, Speich B, Abela IA, and the Swiss HIV Cohort Study. Determinants of antibody response to SARS-CoV-2 mRNA vaccines in people living with HIV. AIDS 36 (10), 1465-1468.

Marconato M*, Abela IA*, Hauser A*, Schwarzmueller M, Katzensteiner R, Braun DL, Epp S, Audigé A, Weber J, Rusert P, Schindler E, Pasin C, West E, Boeni J, Kufner V, Huber M, Zaheri M, Schmutz S, Frey BM, Kouyos RD$, Gunthard HF$, Manz MG$, Trkola A$. Contribution of endogenous and exogenous antibodies to clearance of SARS-CoV-2 during convalescent plasma therapy. The Journal of Clinical Investigation, 2022. 

Huang A*, Cicin-Sain C*, Pasin C*,  Epp S, Audigé A, Müller NJ, Nilsson J, Bankova A, Wolfensberger N, Vilinovszki O, Nair G, Hockl P, Schanz U, Kouyos RD, Hasse B, Zinkernagel AS, Trkola A, Manz MG, Abela IA$, Müller AM$. Antibody Response to SARS-CoV-2 Vaccination in Patients Following Allogeneic Hematopoietic Cell Transplantation. Transplantation and Cellular Therapy, 2022.

Abela IA*, Pasin C*, Schwarzmüller M*, Epp S, Sickmann ME, Schanz ME, Rusert P, Weber J, Schmutz S, Audigé A, Maliqi L, Hunziker A, Hesselman MC, Niklaus CR, Gottschalk J, Schindler E, Wepf A, Karrer U, Wolfensberger A, Rampini SK, Meyer Sauteur PM, Berger C, Huber M, Böni J, Braun DL, Marconato M, Manz MG, Frey BM, Günthard HF$, Kouyos RD$, Trkola A$. Multifactorial seroprofiling dissects the contribution of pre-existing human coronaviruses responses to SARS-CoV-2 immunity. Nature Communications 12, 6703, 2021. ​

Macedo R*, Pasin C*, Ganetsky A*, Harle D, Wang XK, Belay K, Richman LP, Huffman AP, Vonderheide RH, Yates AJ, Porter DL, Wang Y, Zhang Y, Reshef R. Vitamin D deficiency after allogeneic hematopoietic cell transplantation promotes T-cell activation and is inversely associated with an EZH2-ID3 signature. Transplantation and Cellular Therapy. 2021 Sep 28.

Szabo PA, Dogra P, Gray JI, Wells SB, Connors TJ, Weisberg SP, Krupska I, Matsumoto R, Poon MML, Idzikowski E, Morris SE, Pasin C, Yates AJ, Ku A, Chait M, Davis-Porada J, Zhou J, Steinle M, Mackay S, Saqi A, Baldwin MR, Sims PA, Farber DL. Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19. Immunity, 2021.

Pasin C, Moy RH, Reshef R, Yates AJ. Variable selection methods for predicting clinical outcomes following allogeneic hematopoietic cell transplantation. Scientific Reports 11, 3230, 2021. 

Clairon Q, Pasin C, Balelli I, Thiébaut R, Prague M. Parameter estimation in nonlinear mixed effect models based on ordinary differential equations: an optimal control approach. ArXiv 2021. 

Balelli I, Pasin C, Prague M, Crauste F, Van Effelterre T, Bockstal V, Solforosi L, Thiébaut R. A model for establishment, maintenance and reactivation of the immune response after vaccination against Ebola virus. Journal of Theoretical Biology. 2020 Mar 21:110254. 

Pasin C, Balelli I, Van Effelterre T, Bockstal V, Solforosi L, Prague M, Douoguih M, Thiébaut R, for the EBOVAC1 consortium. Dynamics of the humoral immune response to a prime-boost Ebola vaccine: quantification and sources of variation. Journal of Virology, 2019 : JVI-00579. 

Villain L, Commenges D, Pasin C, Prague M, Thiébaut R. Adaptive protocols based on predictions from a mechanistic model of the effect of IL7 on CD4 counts. Statistics in medicine. 2019 Jan 30;38(2):221-35. 

Prague M, Jeffrey MG, Balelli I, Pasin C, Li JZ, Barouch DH, Whitney JB, Hill AL. Viral rebound kinetics following single and combination immunotherapy for HIV/SIV. BioRxiv (2019): 700401.

Pasin C, Dufour F, Villain L, Zhang H, Thiébaut R. Controlling IL-7 injections in HIV-infected patients. Bulletin of Mathematical Biology, 80(9): 23449-2377, 2018.

Gross L, Lhomme E, Pasin C, Richert L, Thiébaut R. Ebola vaccine development: Systematic review of pre-clinical and clinical studies, and meta-analysis of determinants of antibody response variability after vaccination. International Journal of Infectious Diseases, 74: 83-96, 2018

Pasin C, Halloran ME, Gilbert PB, Langevin E, Ochiai RL, Pitisuttithum P, Capeding MR, Carrasquilla G, Frago C, Cortés M, Chambonneau L, Moodie Z. Periods of high dengue transmission defined by rainfall do not impact efficacy of dengue vaccine in regions of endemic disease. PLOS ONE 13(12): e0207878, 2018.

Lhomme E, Richert L, Moodie Z, Pasin C, Kalams SA, Morgan C, Self S, De Rosa SC, Thiébaut R. Early CD4+ T cell responses are associated with subsequent CD8+ T cell responses to an rAd5-based prophylactic prime-boost HIV vaccine strategy. PLOS ONE. 2016 Apr 28;11(4):e0152952.

Steinwart I, Pasin C, Williamson R, Zhang S. Elicitation and identification of properties. In Conference on Learning Theory 2014 May 29 (pp. 482-526).​

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